1. Which program is slower? Hypothesis testing for performance regressions. Jiahao Chen, Jarrett Revels (2016), Submitted, https://github.com/jiahao/paper-benchmark.

2. The right way to search evolving graphs. (2016), Proceedings of GABB’2016 - Graph Algorithms Building Blocks Workshop, http://arxiv.org/abs/1601.08189.

3. Parallel prefix polymorphism permits parallelization, presentation & proof. Jiahao Chen, Alan Edelman (2014), HPTCDL’14 Proceedings of the 1st Workshop on High Performance Technical Computing in Dynamic Languages, 47–56, doi:10.1109/HPTCDL.2014.9, http://jiahao.github.io/parallel-prefix.

4. Array operators using multiple dispatch: A design methodology for array implementations in dynamic languages. Jeff Bezanson, Jiahao Chen, Stefan Karpinski, Viral Shah, Alan Edelman (2014), ARRAY’14 Proceedings of Acm Sigplan International Workshop on Libraries, Languages, and Compilers for Array Programming, 56–61, doi:10.1145/2627373.2627383, http://arxiv.org/abs/1407.3845.

Molecular mechanics and computational chemistry


5. A chemically competent thiosulfuranyl radical on the escherichia coli class III ribonucleotide reductase. Yifeng Wei, Guinevere Mathies, Kenichi Yokoyama, Chen, Jiahao, Robert G. Griffin, JoAnne Stubbe (2014), Journal of the American Chemical Society, 136:9001–9013, doi:10.1021/ja5030194.

6. A pathway to diphosphorus from the dissociation of photoexcited tetraphosphorus. Lee-Ping Wang, Chen, Jiahao, Daniel Tofan, Troy Van Voorhis, Christopher Cummins (2013), RSC Advances, 3:23166—23171, doi:10.1039/C3RA43940B.

7. Error analysis of free probability approximations to the density of states of disordered systems. Chen, Jiahao, Eric Hontz, Jeremy Moix, Matthew Welborn, Troy Van Voorhis, Alberto Suárez, Ramis Movassagh, Alan Edelman (2012), Physical Review Letters, 109:036403, http://prl.aps.org/abstract/PRL/v109/i3/e036403.

8. Nonlinear dimensionality reduction for nonadiabatic dynamics: The influence of conical intersection topography on population transfer rates. Aaron M Virshup, Chen, Jiahao, Todd J Martínez (2012), The Journal of Chemical Physics, 137:22A519, doi:10.1063/1.4742066.

9. Investigating the dearomative rearrangment of biaryl monophosphine-ligated Pd(II) complexes. Phillip J Milner, Thomas John Maimone, Mingjuan Su, Chen, Jiahao, Peter Müller, Stephen L Buchwald (2012), Journal of the American Chemical Society, 134:19922—19934, doi:10.1021/ja310351e.

10. Systematic parameterization of polarizable force fields from quantum chemistry data. Lee-Ping Wang, Chen, Jiahao, Todd J Martínez, Troy Van Voorhis (2013), Journal of Chemical Theory and Computation, 9:452—460, doi:10.1021/ct300826t.

11. Accurate approximations to Anderson models in two and three dimensions using free probability. Matthew G Welborn, Chen, Jiahao, Troy Van Voorhis (2013), Physical Review B, 88:205113, doi:10.1103/PhysRevB.88.205113.

12. Charge conservation in electronegativity equalization and its implications for the electrostatic properties of fluctuating-charge models. Chen, Jiahao, Todd J Martínez (2009), Journal of Chemical Physics, 131:044114, doi:10.1063/1.3183167, http://link.aip.org/link/?JCP/131/044114/1.

13. Comments in general discussion. Chen, Jiahao (2008), Faraday Discussions, 141:81–98, 309–345.

14. The dissociation catastrophe in fluctuating-charge models and its implications for the concept of atomic electronegativity. Chen, Jiahao, Todd J Martínez (2009), Progress in Theoretical Chemistry and Physics, 19:397–416, doi:10.1007/978-90-481-2596-8_19.

15. QTPIE: Charge transfer with polarization current equalization. A fluctuating charge model with correct asymptotics. Chen, Jiahao, Todd J Martínez (2007), Chemical Physics Letters, 438:315–320, doi:10.1016/j.cplett.2007.02.065, http://linkinghub.elsevier.com/retrieve/pii/S0009261407002618.

16. A unified theoretical framework for fluctuating-charge models in atom-space and in bond-space. Chen, Jiahao, Dirk Hundertmark, Todd J Martínez (2008), Journal of Chemical Physics, 129:214113, doi:10.1063/1.3021400, http://www.ncbi.nlm.nih.gov/pubmed/19063550.

17. Synthesis of a mixed-metal {rupt} complex from a ruthenium cluster’. Chen, Jiahao, Audi Siu-Wah Fong, Tzi-Sum Andy Hor (1998), Proceedings of the Science Research Congress Singapore,.


18. Numerical simulations of the exciton coherence length in the photosynthetic light harvesting complex II (LHC-II) of higher plants. Jiahao Chen (2002),.

19. Theory and applications of fluctuating-charge models. Jiahao Chen (2009), 245, http://arxiv.org/abs/1004.0186.